Is Pyrite suitable for small molecules?

Computer-Aided Drug Design at the Durrant Lab Forums Pyrite Is Pyrite suitable for small molecules?

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      Alexandra Tsybizova
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      Dear Professor Durrant,
      I was wondering if Pyrite and Blendmol plugins are suitable for the visualization of trajectories of small molecules, like water.

      When I use the example files that are provided with the plugin, everything works fine, however when I try to apply the same procedures to my trajectories, I get the following motion:
      https://www.dropbox.com/s/76bftr5fyjnyxvb/0001-0600.mkv?dl=0

      Am i doing it wrong, or is it just the limitation of the software?

      Best regards,
      Alexandra

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